Faculty
Oncology Division
Alphabetical list (active faculty):   
Michael C. Wendl

Michael C. Wendl, DSc

Assistant Professor

Department of Medicine

Oncology Division

Computational Biology

Department of Mechanical Engineering & Materials Science

Research Interests

  • Bioinformatics & biostatistics analysis and machine-learning applied to cancer
  • Algorithm and software development for bioinformatics
  • Mathematical modeling of biophysical / biochemical / biomechanical processes
  • Mathematics: differential equations and combinatorial probability

Contact

  • 314-286-1825 (office)
  • Division of Oncology
    Mail Stop 8076-0041-03
    Washington University
    660 South Euclid Avenue
    St. Louis, MO 63110
  • Room 3202, Couch Biomedical Research Building
    4515 McKinley Avenue
    St. Louis, MO 63110 (office)

Journal Publications

  • MSIsensor-Ct: Microsatellite Instability Detection Using CfDNA Sequencing Data
    Han X, Zhang S, Zhou DC, Wang D, He X, Yuan D, Li R, He J, Duan X, Wendl MC, Ding L, Niu B
    Brief Bioinform 2021 Sep 2;22(5):6103954
  • Comprehensive Characterization of 536 Patient-Derived Xenograft Models Prioritizes Candidates For Targeted Treatment
    Sun H, Cao S, Mashl RJ, Mo CK, Zaccaria S, Wendl MC, Davies SR, Bailey MH, Primeau TM, Hoog J, Mudd JL, Dean DA 2nd, Patidar R, Chen L, Wyczalkowski MA, Jayasinghe RG, Rodrigues FM, Terekhanova NV, Li Y, Lim KH, Wang-Gillam A, Van Tine BA, Ma CX, Aft R, Fuh KC, Schwarz JK, Zevallos JP, Puram SV, DiPersio JF, Davis-Dusenbery B, Ellis MJ, Lewis MT, Davies MA, Herlyn M, Fang B, Roth JA, Welm AL, Welm BE, Meric-Bernstam F, Chen F, Fields RC, Li S, Govindan R, Doroshow JH, Moscow JA, Evrard YA, Chuang JH, Raphael BJ, Ding L
    NCI PDXNet Consortium

    Nat Commun 2021 Aug 24;12(1):5086
  • Co-Evolution of Tumor and Immune Cells During Progression of Multiple Myeloma
    Liu R, Gao Q, Foltz SM, Fowles JS, Yao L, Wang JT, Cao S, Sun H, Wendl MC, Sethuraman S, Weerasinghe A, Rettig MP, Storrs EP, Yoon CJ, Wyczalkowski MA, McMichael JF, Kohnen DR, King J, Goldsmith SR, O'Neal J, Fulton RS, Fronick CC, Ley TJ, Jayasinghe RG, Fiala MA, Oh ST, DiPersio JF, Vij R, Ding L
    Nat Commun 2021 May 7;12(1):2559
  • Spatially Interacting Phosphorylation Sites and Mutations in Cancer
    Huang KL, Scott AD, Zhou DC, Wang LB, Weerasinghe A, Elmas A, Liu R, Wu Y, Wendl MC, Wyczalkowski MA, Baral J, Sengupta S, Lai CW, Ruggles K, Payne SH, Raphael B, Fenyo D, Chen K, Mills G, Ding L
    Nat Commun 2021 Apr 19;12(1):2313
  • Proteogenomic and Metabolomic Characterization of Human Glioblastoma
    Wang LB, Karpova A, Gritsenko MA, Kyle JE, Cao S, Li Y, Rykunov D, Colaprico A, Rothstein JH, Hong R, Stathias V, Cornwell M, Petralia F, Wu Y, Reva B, Krug K, Pugliese P, Kawaler E, Olsen LK, Liang WW, Song X, Dou Y, Wendl MC, Caravan W, Liu W, Cui Zhou D, Ji J, Tsai CF, Petyuk VA, Moon J, Ma W, Chu RK, Weitz KK, Moore RJ, Monroe ME, Zhao R, Yang X, Yoo S, Krek A, Demopoulos A, Zhu H, Wyczalkowski MA, McMichael JF, Henderson BL, Lindgren CM, Boekweg H, Lu S, Baral J, Yao L, Stratton KG, Bramer LM, Zink E, Couvillion SP, Bloodsworth KJ, Satpathy S, Sieh W, Boca SM, Schurer S, Chen F, Wiznerowicz M, Ketchum KA, Boja ES, Kinsinger CR, Robles AI, Hiltke T, Thiagarajan M, Nesvizhskii AI, Zhang B, Mani DR, Ceccarelli M, Chen XS, Cottingham SL, Li QK, Kim AH, Fenyo D, Ruggles KV, Rodriguez H, Mesri M, Payne SH, Resnick AC, Wang P, Smith RD, Iavarone A, Chheda MG, Barnholtz-Sloan JS, Rodland KD, Liu T, Ding L
    Clinical Proteomic Tumor Analysis Consortium

    Cancer Cell 2021 Apr 12;39(4):509-528
  • Proteogenomic Insights Into the Biology and Treatment of HPV-Negative Head and Neck Squamous Cell Carcinoma
    Huang C, Chen L, Savage SR, Eguez RV, Dou Y, Li Y, da Veiga Leprevost F, Jaehnig EJ, Lei JT, Wen B, Schnaubelt M, Krug K, Song X, Cieslik M, Chang HY, Wyczalkowski MA, Li K, Colaprico A, Li QK, Clark DJ, Hu Y, Cao L, Pan J, Wang Y, Cho KC, Shi Z, Liao Y, Jiang W, Anurag M, Ji J, Yoo S, Zhou DC, Liang WW, Wendl M, Vats P, Carr SA, Mani DR, Zhang Z, Qian J, Chen XS, Pico AR, Wang P, Chinnaiyan AM, Ketchum KA, Kinsinger CR, Robles AI, An E, Hiltke T, Mesri M, Thiagarajan M, Weaver AM, Sikora AG, Lubinski J, Wierzbicka M, Wiznerowicz M, Satpathy S, Gillette MA, Miles G, Ellis MJ, Omenn GS, Rodriguez H, Boja ES, Dhanasekaran SM, Ding L, Nesvizhskii AI, El-Naggar AK, Chan DW, Zhang H, Zhang B
    Clinical Proteomic Tumor Analysis Consortium

    Cancer Cell 2021 Mar 8;39(3):361-379
  • Discovery of Driver Non-Coding Splice-Site-Creating Mutations in Cancer
    Cao S, Zhou DC, Oh C, Jayasinghe RG, Zhao Y, Yoon CJ, Wyczalkowski MA, Bailey MH, Tsou T, Gao Q, Malone A, Reynolds S, Shmulevich I, Wendl MC, Chen F, Ding L
    Nat Commun 2020 Nov 4;11(1):5573
  • Retrospective Evaluation of Whole Exome and Genome Mutation Calls in 746 Cancer Samples
    Bailey MH, Meyerson WU, Dursi LJ, Wang LB, Dong G, Liang WW, Weerasinghe A, Li S, Li Y, Kelso S, Saksena G, Ellrott K, Wendl MC, Wheeler DA, Getz G, Simpson JT, Gerstein MB, Ding L
    MC3 Working Group

    Nat Commun 2020 Sep 21;11(1):4748
  • Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma
    Gillette MA, Satpathy S, Cao S, Dhanasekaran SM, Vasaikar SV, Krug K, Petralia F, Li Y, Liang WW, Reva B, Krek A, Ji J, Song X, Liu W, Hong R, Yao L, Blumenberg L, Savage SR, Wendl MC, Wen B, Li K, Tang LC, MacMullan MA, Avanessian SC, Kane MH, Newton CJ, Cornwell M, Kothadia RB, Ma W, Yoo S, Mannan R, Vats P, Kumar-Sinha C, Kawaler EA, Omelchenko T, Colaprico A, Geffen Y, Maruvka YE, da Veiga Leprevost F, Wiznerowicz M, Gumus ZH, Veluswamy RR, Hostetter G, Heiman DI, Wyczalkowski MA, Hiltke T, Mesri M, Kinsinger CR, Boja ES, Omenn GS, Chinnaiyan AM, Rodriguez H, Li QK, Jewell SD, Thiagarajan M, Getz G, Zhang B, Fenyo D, Ruggles KV, Cieslik MP, Robles AI, Clauser KR, Govindan R, Wang P, Nesvizhskii AI, Ding L, Mani DR, Carr SA
    Clinical Proteomic Tumor Analysis Consortium

    Cell 2020 Jul 9;182(1):200-225
  • The Human Tumor Atlas Network: Charting Tumor Transitions Across Space and Time at Single-Cell Resolution
    Rozenblatt-Rosen O, Regev A, Oberdoerffer P, Nawy T, Hupalowska A, Rood JE, Ashenberg O, Cerami E, Coffey RJ, Demir E, Ding L, Esplin ED, Ford JM, Goecks J, Ghosh S, Gray JW, Guinney J, Hanlon SE, Hughes SK, Hwang ES, Iacobuzio-Donahue CA, Jane-Valbuena J, Johnson BE, Lau KS, Lively T, Mazzilli SA, Pe'er D, Santagata S, Shalek AK, Schapiro D, Snyder MP, Sorger PK, Spira AE, Srivastava S, Tan K, West RB, Williams EH
    Human Tumor Atlas Network (Collaborators include: Wendl MC)

    Cell 2020 Apr 16;181(2):236-249
  • Pan-Cancer Analysis of Whole Genomes
    ICGC/TCGA Pan-Cancer Analysis of Whole Genomes Consortium (Contributors include: Wendl MC)
    Nature 2020 Feb;578(7793):82-93
  • Regulated Phosphosignaling Associated With Breast Cancer Subtypes and Druggability
    Huang KL, Wu Y, Primeau T, Wang YT, Gao Y, McMichael JF, Scott AD, Cao S, Wendl MC, Johnson KJ, Ruggles K, Held J, Payne SH, Davies S, Dar A, Kinsinger CR, Mesri M, Rodriguez H, Ellis MJ, Townsend RR, Chen F, Fenyo D, Li S, Liu T, Carr SA, Ding L
    Mol Cell Proteomics 2019 Aug;18(8):1630-1650
  • Integrated Transcriptomic-Genomic Tool Texomer Profiles Cancer Tissues
    Wang F, Zhang S, Kim TB, Lin YY, Iqbal R, Wang Z, Mohanty V, Sircar K, Karam JA, Wendl MC, Meric-Bernstam F, Weinstein JN, Ding L, Mills GB, Chen K
    Nat Methods 2019 May;16(5):401-404
  • Integrative Omics Analyses Broaden Treatment Targets in Human Cancer
    Sengupta S, Sun SQ, Huang KL, Oh C, Bailey MH, Varghese R, Wyczalkowski MA, Ning J, Tripathi P, McMichael JF, Johnson KJ, Kandoth C, Welch J, Ma C, Wendl MC, Payne SH, Fenyo D, Townsend RR, Dipersio JF, Chen F, Ding L
    Genome Med 2018 Jul 27;10(1):60
  • Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics
    Ding L, Bailey MH, Porta-Pardo E, Thorsson V, Colaprico A, Bertrand D, Gibbs DL, Weerasinghe A, Huang KL, Tokheim C, Cortes-Ciriano I, Jayasinghe R, Chen F, Yu L, Sun S, Olsen C, Kim J, Taylor AM, Cherniack AD, Akbani R, Suphavilai C, Nagarajan N, Stuart JM, Mills GB, Wyczalkowski MA, Vincent BG, Hutter CM, Zenklusen JC, Hoadley KA, Wendl MC, Shmulevich L, Lazar AJ, Wheeler DA, Getz G
    Cancer Genome Atlas Research Network

    Cell 2018 Apr 5;173(2):305-320
  • Comprehensive Characterization of Cancer Driver Genes and Mutations
    Bailey MH, Tokheim C, Porta-Pardo E, Sengupta S, Bertrand D, Weerasinghe A, Colaprico A, Wendl MC, Kim J, Reardon B, Ng PK, Jeong KJ, Cao S, Wang Z, Gao J, Gao Q, Wang F, Liu EM, Mularoni L, Rubio-Perez C, Nagarajan N, Cortes-Ciriano I, Zhou DC, Liang WW, Hess JM, Yellapantula VD, Tamborero D, Gonzalez-Perez A, Suphavilai C, Ko JY, Khurana E, Park PJ, Van Allen EM, Liang H, Lawrence MS, Godzik A, Lopez-Bigas N, Stuart J, Wheeler D, Getz G, Chen K, Lazar AJ, Mills GB, Karchin R, Ding L
    MC3 Working Group

    Cell 2018 Apr 5;173(2):371-385
  • Systematic Analysis of Splice-Site-Creating Mutations in Cancer
    Jayasinghe RG, Cao S, Gao Q, Wendl MC, Vo NS, Reynolds SM, Zhao Y, Climente-Gonzalez H, Chai S, Wang F, Varghese R, Huang M, Liang WW, Wyczalkowski MA, Sengupta S, Li Z, Payne SH, Fenyo D, Miner JH, Walter MJ, Vincent B, Eyras E, Chen K, Shmulevich I, Chen F, Ding L
    Cancer Genome Atlas Research Network

    Cell Rep 2018 Apr 3;23(1):270-281
  • Pathogenic Germline Variants in 10,389 Adult Cancers
    Huang KL, Mashl RJ, Wu Y, Ritter DI, Wang J, Oh C, Paczkowska M, Reynolds S, Wyczalkowski MA, Oak N, Scott AD, Krassowski M, Cherniack AD, Houlahan KE, Jayasinghe R, Wang LB, Zhou DC, Liu D, Cao S, Kim YW, Koire A, McMichael JF, Hucthagowder V, Kim TB, Hahn A, Wang C, McLellan MD, Al-Mulla F, Johnson KJ, Lichtarge O, Boutros PC, Raphael B, Lazar AJ, Zhang W, Wendl MC, Govindan R, Jain S, Wheeler D, Kulkarni S, Dipersio JF, Reimand J, Meric-Bernstam F, Chen K, Shmulevich I, Plon SE, Chen F, Ding L
    Cancer Genome Atlas Research Network

    Cell 2018 Apr 5;173(2):355-370
  • Driver Fusions and Their Implications in the Development and Treatment of Human Cancers
    Gao Q, Liang WW, Foltz SM, Mutharasu G, Jayasinghe RG, Cao S, Liao WW, Reynolds SM, Wyczalkowski MA, Yao L, Yu L, Sun SQ, Chen K, Lazar AJ, Fields RC, Wendl MC, Van Tine BA, Vij R, Chen F, Nykter M, Shmulevich I, Ding L
    Fusion Analysis Working Group

    Cell Rep 2018 Apr 3;23(1):227-238
  • Units: Don't Tamper With SI-Unit Consistency
    Wendl MC
    Nature 2017 Sep 13;549(7671):160
  • BreakPoint Surveyor: A Pipeline for Structural Variant Visualization
    Wyczalkowski MA, Wylie KM, Cao S, McLellan MD, Flynn J, Huang M, Ye K, Fan X, Chen K, Wendl MC, Ding L
    Bioinformatics 2017 Oct 1;33(19):3121-3122
  • GenomeVIP: A Cloud Platform for Genomic Variant Discovery and Interpretation
    Mashl RJ, Scott AD, Huang KL, Wyczalkowski MA, Yoon CJ, Niu B, DeNardo E, Yellapantula VD, Handsaker RE, Chen K, Koboldt DC, Ye K, Fenyo D, Raphael BJ, Wendl MC, Ding L
    Genome Res 2017 Aug;27(8):1450-1459
  • Proteogenomic Integration Reveals Therapeutic Targets in Breast Cancer Xenografts
    Huang KL, Li S, Mertins P, Cao S, Gunawardena HP, Ruggles KV, Mani DR, Clauser KR, Tanioka M, Usary J, Kavuri SM, Xie L, Yoon C, Qiao JW, Wrobel J, Wyczalkowski MA, Erdmann-Gilmore P, Snider JE, Hoog J, Singh P, Niu B, Guo Z, Sun SQ, Sanati S, Kawaler E, Wang X, Scott A, Ye K, McLellan MD, Wendl MC, Malovannaya A, Held JM, Gillette MA, Fenyo D, Kinsinger CR, Mesri M, Rodriguez H, Davies SR, Perou CM, Ma C, Reid Townsend R, Chen X, Carr SA, Ellis MJ, Ding L
    Nat Commun 2017 Mar 28;8:14864
  • Tumor Evolution in Two Patients With Basal-Like Breast Cancer: A Retrospective Genomics Study of Multiple Metastases
    Hoadley KA, Siegel MB, Kanchi KL, Miller CA, Ding L, Zhao W, He X, Parker JS, Wendl MC, Fulton RS, Demeter RT, Wilson RK, Carey LA, Perou CM, Mardis ER
    PLoS Med 2016 Dec 6;13(12):e1002174
  • Pseudonymous Fame
    Wendl MC
    Science 2016 Mar 25;351(6280):1406
  • Divergent Viral Presentation Among Human Tumors and Adjacent Normal Tissues
    Cao S, Wendl MC, Wyczalkowski MA, Wylie K, Ye K, Jayasinghe R, Xie M, Wu S, Niu B, Grubb R 3rd, Johnson KJ, Gay H, Chen K, Rader JS, Dipersio JF, Chen F, Ding L
    Sci Rep 2016 Jun 24;6:28294
  • Protein-Structure-Guided Discovery of Functional Mutations Across 19 Cancer Types
    Niu B, Scott AD, Sengupta S, Bailey MH, Batra P, Ning J, Wyczalkowski MA, Liang WW, Zhang Q, McLellan MD, Sun SQ, Tripathi P, Lou C, Ye K, Mashl RJ, Wallis J, Wendl MC, Chen F, Ding L
    Nat Genet 2016 Aug;48(8):827-37
  • Systematic Discovery of Complex Insertions and Deletions in Human Cancers
    Ye K, Wang J, Jayasinghe R, Lameijer EW, McMichael JF, Ning J, McLellan MD, Xie M, Cao S, Yellapantula V, Huang KL, Scott A, Foltz S, Niu B, Johnson KJ, Moed M, Slagboom PE, Chen F, Wendl MC, Ding L
    Nat Med 2016 Jan;22(1):97-104
  • Patterns and Functional Implications of Rare Germline Variants Across 12 Cancer Types
    Lu C*, Xie M*, Wendl MC*, Wang J, McLellan MD, Leiserson MD, Huang KL, Wyczalkowski MA, Jayasinghe R, Banerjee T, Ning J, Tripathi P, Zhang Q, Niu B, Ye K, Schmidt HK, Fulton RS, McMichael JF, Batra P, Kandoth C, Bharadwaj M, Koboldt DC, Miller CA, Kanchi KL, Eldred JM, Larson DE, Welch JS, You M, Ozenberger BA, Govindan R, Walter MJ, Ellis MJ, Mardis ER, Graubert TA, Dipersio JF, Ley TJ, Wilson RK, Goodfellow PJ, Raphael BJ, Chen F, Johnson KJ, Parvin JD, Ding L (*co-first author)
    Nat Commun 2015 Dec 22;6:10086
  • Optimizing Cancer Genome Sequencing and Analysis
    Griffith M, Miller CA, Griffith OL, Krysiak K, Skidmore ZL, Ramu A, Walker JR, Dang HX, Trani L, Larson DE, Demeter RT, Wendl MC, McMichael JF, Austin RE, Magrini V, McGrath SD, Ly A, Kulkarni S, Cordes MG, Fronick CC, Fulton RS, Maher CA, Ding L, Klco JM, Mardis ER, Ley TJ, Wilson RK
    Cell Syst 2015 Sep 23;1(3):210-223
  • Characteristics of De Novo Structural Changes in the Human Genome
    Kloosterman WP, Francioli LC, Hormozdiari F, Marschall T, Hehir-Kwa JY, Abdellaoui A, Lameijer EW, Moed MH, Koval V, Renkens I, van Roosmalen MJ, Arp P, Karssen LC, Coe BP, Handsaker RE, Suchiman ED, Cuppen E, Thung DT, McVey M, Wendl MC, Uitterlinden A, van Duijn CM, Swertz MA, Wijmenga C, van Ommen GB, Slagboom PE, Boomsma DI, Schonhuth A, Eichler EE, de Bakker PI, Ye K, Guryev V
    Genome of Netherlands Consortium

    Genome Res 2015 Jun;25(6):792-801
  • Age-Related Mutations Associated With Clonal Hematopoietic Expansion and Malignancies
    Xie M, Lu C, Wang J, McLellan MD, Johnson KJ, Wendl MC, McMichael JF, Schmidt HK, Yellapantula V, Miller CA, Ozenberger BA, Welch JS, Link DC, Walter MJ, Mardis ER, Dipersio JF, Chen F, Wilson RK, Ley TJ, Ding L
    Nat Med 2014 Dec;20(12):1472-8
  • Clonal Architectures and Driver Mutations in Metastatic Melanomas
    Ding L, Kim M, Kanchi KL, Dees ND, Lu C, Griffith M, Fenstermacher D, Sung H, Miller CA, Goetz B, Wendl MC, Griffith O, Cornelius LA, Linette GP, McMichael JF, Sondak VK, Fields RC, Ley TJ, Mule JJ, Wilson RK, Weber JS
    PLoS One 2014 Nov 13;9(11):e111153
  • Comprehensive Molecular Profiling of Lung Adenocarcinoma
    Cancer Genome Atlas Research Network (Collaborators include: Wendl MC)
    Nature 2014 Jul 31;511(7511):543-50
  • Expanding the Computational Toolbox for Mining Cancer Genomes
    Ding L, Wendl MC, McMichael JF, Raphael BJ
    Nat Rev Genet 2014 Aug;15(8):556-70
  • MSIsensor: Microsatellite Instability Detection Using Paired Tumor-Normal Sequence Data
    Niu B, Ye K, Zhang Q, Lu C, Xie M, McLellan MD, Wendl MC, Ding L
    Bioinformatics 2014 Apr 1;30(7):1015-6
  • Integrated Analysis of Germline and Somatic Variants in Ovarian Cancer
    Kanchi KL, Johnson KJ, Lu C, McLellan MD, Leiserson MD, Wendl MC, Zhang Q, Koboldt DC, Xie M, Kandoth C, McMichael JF, Wyczalkowski MA, Larson DE, Schmidt HK, Miller CA, Fulton RS, Spellman PT, Mardis ER, Druley TE, Graubert TA, Goodfellow PJ, Raphael BJ, Wilson RK, Ding L
    Nat Commun 2014;5:3156
  • Differences That Matter in Cancer Genomics
    Ding L, Wendl MC
    Nat Biotechnol 2013 Oct;31(10):892-3
  • Advances for Studying Clonal Evolution in Cancer
    Ding L, Raphael BJ, Chen F, Wendl MC
    Cancer Lett 2013 Nov 1;340(2):212-9
  • Mutational Landscape and Significance Across 12 Major Cancer Types
    Kandoth C, McLellan MD, Vandin F, Ye K, Niu B, Lu C, Xie M, Zhang Q, McMichael JF, Wyczalkowski MA, Leiserson MDM, Miller CA, Welch JS, Walter MJ, Wendl MC, Ley TJ, Wilson RK, Raphael BJ, Ding L
    Nature 2013 Oct 17;502(7471):333-339
  • Coverage Theories for Metagenomic DNA Sequencing Based on a Generalization of Stevens' Theorem
    Wendl MC, Kota K, Weinstock GM, Mitreva M
    J Math Biol 2013 Nov;67(5):1141-61
  • The Cancer Genome Atlas Pan-Cancer Analysis Project
    Weinstein JN, Collisson EA, Mills GB, Shaw KR, Ozenberger BA, Ellrott K, Shmulevich I, Sander C, Stuart JM
    Cancer Genome Atlas Research Network (Collaborators include: Wendl MC)

    Nat Genet 2013 Oct;45(10):1113-20
  • Genomic and Epigenomic Landscapes of Adult De Novo Acute Myeloid Leukemia
    Ley TJ, Miller C, Ding L, Raphael BJ, Mungall AJ, Robertson A, Hoadley K, Triche TJ Jr, Laird PW, Baty JD, Fulton LL, Fulton R, Heath SE, Kalicki-Veizer J, Kandoth C, Klco JM, Koboldt DC, Kanchi KL, Kulkarni S, Lamprecht TL, Larson DE, Lin L, Lu C, McLellan MD, McMichael JF, Payton J, Schmidt H, Spencer DH, Tomasson MH, Wallis JW, Wartman LD, Watson MA, Welch J, Wendl MC, Ally A, Balasundaram M, Birol I, Butterfield Y, Chiu R, Chu A, Chuah E, Chun HJ, Corbett R, Dhalla N, Guin R, He A, Hirst C, Hirst M, Holt RA, Jones S, Karsan A, Lee D, Li HI, Marra MA, Mayo M, Moore RA, Mungall K, Parker J, Pleasance E, Plettner P, Schein J, Stoll D, Swanson L, Tam A, Thiessen N, Varhol R, Wye N, Zhao Y, Gabriel S, Getz G, Sougnez C, Zou L, Leiserson MD, Vandin F, Wu HT, Applebaum F, Baylin SB, Akbani R, Broom BM, Chen K, Motter TC, Nguyen K, Weinstein JN, Zhang N, Ferguson ML, Adams C, Black A, Bowen J, Gastier-Foster J, Grossman T, Lichtenberg T, Wise L, Davidsen T, Demchok JA, Shaw KR, Sheth M, Sofia HJ, Yang L, Downing JR, Eley G
    Cancer Genome Atlas Research Network

    N Engl J Med 2013 May 30;368(22):2059-74
  • An Integrated Map of Genetic Variation From 1,092 Human Genomes
    Abecasis GR, Auton A, Brooks LD, DePristo MA, Durbin RM, Handsaker RE, Kang HM, Marth GT, McVean GA
    1000 Genomes Project Consortium (Contributors include: Wendl MC)

    Nature 2012 Nov 1;491(7422):56-65
  • Whole-Genome Analysis Informs Breast Cancer Response to Aromatase Inhibition
    Ellis MJ, Ding L, Shen D, Luo J, Suman VJ, Wallis JW, Van Tine BA, Hoog J, Goiffon RJ, Goldstein TC, Ng S, Lin L, Crowder R, Snider J, Ballman K, Weber J, Chen K, Koboldt DC, Kandoth C, Schierding WS, McMichael JF, Miller CA, Lu C, Harris CC, McLellan MD, Wendl MC, DeSchryver K, Allred DC, Esserman L, Unzeitig G, Margenthaler J, Babiera GV, Marcom PK, Guenther JM, Leitch M, Hunt K, Olson J, Tao Y, Maher CA, Fulton LL, Fulton RS, Harrison M, Oberkfell B, Du F, Demeter R, Vickery TL, Elhammali A, Piwnica-Worms H, McDonald S, Watson M, Dooling DJ, Ota D, Chang LW, Bose R, Ley TJ, Piwnica-Worms D, Stuart JM, Wilson RK, Mardis ER
    Nature 2012 Jun 10;486(7403):353-60
  • MuSiC: Identifying Mutational Significance in Cancer Genomes
    Dees ND, Zhang Q, Kandoth C, Wendl MC, Schierding W, Koboldt DC, Mooney TB, Callaway MB, Dooling D, Mardis ER, Wilson RK, Ding L
    Genome Res 2012 Aug;22(8):1589-98
  • Background Mutations in Parental Cells Account for Most of the Genetic Heterogeneity of Induced Pluripotent Stem Cells
    Young MA, Larson DE, Sun CW, George DR, Ding L, Miller CA, Lin L, Pawlik KM, Chen K, Fan X, Schmidt H, Kalicki-Veizer J, Cook LL, Swift GW, Demeter RT, Wendl MC, Sands MS, Mardis ER, Wilson RK, Townes TM, Ley TJ
    Cell Stem Cell 2012 May 4;10(5):570-82
  • Cancer Exome Analysis Reveals a T-Cell-Dependent Mechanism of Cancer Immunoediting
    Matsushita H, Vesely MD, Koboldt DC, Rickert CG, Uppaluri R, Magrini VJ, Arthur CD, White JM, Chen YS, Shea LK, Hundal J, Wendl MC, Demeter R, Wylie T, Allison JP, Smyth MJ, Old LJ, Mardis ER, Schreiber RD
    Nature 2012 Feb 8;482(7385):400-4
  • Clonal Evolution in Relapsed Acute Myeloid Leukaemia Revealed by Whole-Genome Sequencing
    Ding L, Ley TJ, Larson DE, Miller CA, Koboldt DC, Welch JS, Ritchey JK, Young MA, Lamprecht T, McLellan MD, McMichael JF, Wallis JW, Lu C, Shen D, Harris CC, Dooling DJ, Fulton RS, Fulton LL, Chen K, Schmidt H, Kalicki-Veizer J, Magrini VJ, Cook L, McGrath SD, Vickery TL, Wendl MC, Heath S, Watson MA, Link DC, Tomasson MH, Shannon WD, Payton JE, Kulkarni S, Westervelt P, Walter MJ, Graubert TA, Mardis ER, Wilson RK, DiPersio JF
    Nature 2012 Jan 11;481(7382):506-10
  • Integrated Genomic Analyses of Ovarian Carcinoma
    Cancer Genome Atlas Research Network (Collaborators include: Wendl M)
    Nature 2011 Jun 29;474(7353):609-15
  • PathScan: A Tool for Discerning Mutational Significance in Groups of Putative Cancer Genes
    Wendl MC, Wallis JW, Lin L, Kandoth C, Mardis ER, Wilson RK, Ding L
    Bioinformatics 2011 Jun 15;27(12):1595-602
  • Analysis of Next-Generation Genomic Data in Cancer: Accomplishments and Challenges
    Ding L, Wendl MC, Koboldt DC, Mardis ER
    Hum Mol Genet 2010 Oct 15;19(R2):R188-96
  • A Map of Human Genome Variation From Population-Scale Sequencing
    Abecasis GR, Altshuler D, Auton A, Brooks LD, Durbin RM, Gibbs RA, Hurles ME, McVean GA
    1000 Genomes Project Consortium (Collaborators include: Wendl MC)

    Nature 2010 Oct 28;467(7319):1061-73
  • Genome Remodelling in a Basal-Like Breast Cancer Metastasis and Xenograft
    Ding L, Ellis MJ, Li S, Larson DE, Chen K, Wallis JW, Harris CC, McLellan MD, Fulton RS, Fulton LL, Abbott RM, Hoog J, Dooling DJ, Koboldt DC, Schmidt H, Kalicki J, Zhang Q, Chen L, Lin L, Wendl MC, McMichael JF, Magrini VJ, Cook L, McGrath SD, Vickery TL, Appelbaum E, Deschryver K, Davies S, Guintoli T, Lin L, Crowder R, Tao Y, Snider JE, Smith SM, Dukes AF, Sanderson GE, Pohl CS, Delehaunty KD, Fronick CC, Pape KA, Reed JS, Robinson JS, Hodges JS, Schierding W, Dees ND, Shen D, Locke DP, Wiechert ME, Eldred JM, Peck JB, Oberkfell BJ, Lolofie JT, Du F, Hawkins AE, O'Laughlin MD, Bernard KE, Cunningham M, Elliott G, Mason MD, Thompson DM Jr, Ivanovich JL, Goodfellow PJ, Perou CM, Weinstock GM, Aft R, Watson M, Ley TJ, Wilson RK, Mardis ER
    Nature 2010 Apr 15;464(7291):999-1005
  • The Theory of Discovering Rare Variants Via DNA Sequencing
    Wendl MC, Wilson RK
    BMC Genomics 2009 Oct 20;10:485
  • Statistical Aspects of Discerning Indel-Type Structural Variation Via DNA Sequence Alignment
    Wendl MC, Wilson RK
    BMC Genomics 2009 Aug 5;10:359
  • Technology Takes on Deadlines for Fetal Human Rights
    Wendl MC
    Nature 2009 Apr 16;458(7240):831
  • BreakDancer: An Algorithm for High-Resolution Mapping of Genomic Structural Variation
    Chen K, Wallis JW, McLellan MD, Larson DE, Kalicki JM, Pohl CS, McGrath SD, Wendl MC, Zhang Q, Locke DP, Shi X, Fulton RS, Ley TJ, Wilson RK, Ding L, Mardis ER
    Nat Methods 2009 Sep;6(9):677-81
  • Somatic Mutations Affect Key Pathways in Lung Adenocarcinoma
    Ding L, Getz G, Wheeler DA, Mardis ER, McLellan MD, Cibulskis K, Sougnez C, Greulich H, Muzny DM, Morgan MB, Fulton L, Fulton RS, Zhang Q, Wendl MC, Lawrence MS, Larson DE, Chen K, Dooling DJ, Sabo A, Hawes AC, Shen H, Jhangiani SN, Lewis LR, Hall O, Zhu Y, Mathew T, Ren Y, Yao J, Scherer SE, Clerc K, Metcalf GA, Ng B, Milosavljevic A, Gonzalez-Garay ML, Osborne JR, Meyer R, Shi X, Tang Y, Koboldt DC, Lin L, Abbott R, Miner TL, Pohl C, Fewell G, Haipek C, Schmidt H, Dunford-Shore BH, Kraja A, Crosby SD, Sawyer CS, Vickery T, Sander S, Robinson J, Winckler W, Baldwin J, Chirieac LR, Dutt A, Fennell T, Hanna M, Johnson BE, Onofrio RC, Thomas RK, Tonon G, Weir BA, Zhao X, Ziaugra L, Zody MC, Giordano T, Orringer MB, Roth JA, Spitz MR, Wistuba II, Ozenberger B, Good PJ, Chang AC, Beer DG, Watson MA, Ladanyi M, Broderick S, Yoshizawa A, Travis WD, Pao W, Province MA, Weinstock GM, Varmus HE, Gabriel SB, Lander ES, Gibbs RA, Meyerson M, Wilson RK
    Nature 2008 Oct 23;455(7216):1069-75
  • Comprehensive Genomic Characterization Defines Human Glioblastoma Genes and Core Pathways
    Cancer Genome Atlas Research Network (Collaborators include: Wendl MC)
    Nature 2008 Oct 23;455(7216):1061-8
  • Aspects of Coverage in Medical DNA Sequencing
    Wendl MC, Wilson RK
    BMC Bioinformatics 2008 May 16;9:239
  • Random Covering of Multiple One-Dimensional Finite Domains With an Application to DNA Sequencing
    Wendl MC
    SIAM Journal on Applied Mathematics2008;68(3):890-905
  • Design and Implementation of a Generalized Laboratory Data Model
    Wendl MC, Smith S, Pohl CS, Dooling DJ, Chinwalla AT, Crouse K, Hepler T, Leong S, Carmichael L, Nhan M, Oberkfell BJ, Mardis ER, Hillier LW, Wilson RK
    BMC Bioinformatics 2007 Sep 26;8:362
  • Algebraic Correction Methods for Computational Assessment of Clone Overlaps in DNA Fingerprint Mapping
    Wendl MC
    BMC Bioinformatics 2007 Apr 18;8:127
  • PolyScan: An Automatic Indel and SNP Detection Approach to the Analysis of Human Resequencing Data
    Chen K, McLellan MD, Ding L, Wendl MC, Kasai Y, Wilson RK, Mardis ER
    Genome Res 2007 May;17(5):659-66
  • H-Index: However Ranked, Citations Need Context
    Wendl MC
    Nature 2007 Sep 27;449(7161):403
  • Codon Usage Patterns in Nematoda: Analysis Based on Over 25 Million Codons in Thirty-Two Species
    Mitreva M, Wendl MC, Martin J, Wylie T, Yin Y, Larson A, Parkinson J, Waterston RH, McCarter JP
    Genome Biol 2006;7(8):R75
  • A General Coverage Theory for Shotgun DNA Sequencing
    Wendl MC
    J Comput Biol 2006 Jul-Aug;13(6):1177-96
  • Occupancy Modeling of Coverage Distribution for Whole Genome Shotgun DNA Sequencing
    Wendl MC
    Bull Math Biol 2006 Jan;68(1):179-96
  • Extension of Lander-Waterman Theory for Sequencing Filtered DNA Libraries
    Wendl MC, Barbazuk WB
    BMC Bioinformatics 2005 Oct 10;6:245
  • Initial Sequence of the Chimpanzee Genome and Comparison With the Human Genome
    Chimpanzee Sequencing and Analysis Consortium (Collaborators include: Wendl MC)
    Nature 2005 Sep 1;437(7055):69-87
  • Probabilistic Assessment of Clone Overlaps in DNA Fingerprint Mapping Via a Priori Models
    Wendl MC
    J Comput Biol 2005 Apr;12(3):283-97
  • Bioweapons Could Kill More in One Strike Than Guns
    Wendl MC
    Nature 2005 Sep 8;437(7056):192
  • The Question of Forbidden Knowledge
    Wendl MC
    Science 2005 Jun 10;308(5728):1549-50
  • Generation and Annotation of the DNA Sequences of Human Chromosomes 2 and 4
    Hillier LW, Graves TA, Fulton RS, Fulton LA, Pepin KH, Minx P, Wagner-McPherson C, Layman D, Wylie K, Sekhon M, Becker MC, Fewell GA, Delehaunty KD, Miner TL, Nash WE, Kremitzki C, Oddy L, Du H, Sun H, Bradshaw-Cordum H, Ali J, Carter J, Cordes M, Harris A, Isak A, van Brunt A, Nguyen C, Du F, Courtney L, Kalicki J, Ozersky P, Abbott S, Armstrong J, Belter EA, Caruso L, Cedroni M, Cotton M, Davidson T, Desai A, Elliott G, Erb T, Fronick C, Gaige T, Haakenson W, Haglund K, Holmes A, Harkins R, Kim K, Kruchowski SS, Strong CM, Grewal N, Goyea E, Hou S, Levy A, Martinka S, Mead K, McLellan MD, Meyer R, Randall-Maher J, Tomlinson C, Dauphin-Kohlberg S, Kozlowicz-Reilly A, Shah N, Swearengen-Shahid S, Snider J, Strong JT, Thompson J, Yoakum M, Leonard S, Pearman C, Trani L, Radionenko M, Waligorski JE, Wang C, Rock SM, Tin-Wollam AM, Maupin R, Latreille P, Wendl MC, Yang SP, Pohl C, Wallis JW, Spieth J, Bieri TA, Berkowicz N, Nelson JO, Osborne J, Ding L, Meyer R, Sabo A, Shotland Y, Sinha P, Wohldmann PE, Cook LL, Hickenbotham MT, Eldred J, Williams D, Jones TA, She X, Ciccarelli FD, Izaurralde E, Taylor J, Schmutz J, Myers RM, Cox DR, Huang X, McPherson JD, Mardis ER, Clifton SW, Warren WC, Chinwalla AT, Eddy SR, Marra MA, Ovcharenko I, Furey TS, Miller W, Eichler EE, Bork P, Suyama M, Torrents D, Waterston RH, Wilson RK
    Nature 2005 Apr 7;434(7034):724-31
  • Finishing the Euchromatic Sequence of the Human Genome
    International Human Genome Sequencing Consortium (Collaborators include: Wendl MC)
    Nature 2004 Oct 21;431(7011):931-45
  • Gap Statistics for Whole Genome Shotgun DNA Sequencing Projects
    Wendl MC, Yang SP
    Bioinformatics 2004 Jul 10;20(10):1527-34
  • Collision Probability Between Sets of Random Variables
    Wendl MC
    Statistics and Probability Letters 2003;64(3):249-254
  • The DNA Sequence of Human Chromosome 7
    Hillier LW, Fulton RS, Fulton LA, Graves TA, Pepin KH, Wagner-McPherson C, Layman D, Maas J, Jaeger S, Walker R, Wylie K, Sekhon M, Becker MC, O'Laughlin MD, Schaller ME, Fewell GA, Delehaunty KD, Miner TL, Nash WE, Cordes M, Du H, Sun H, Edwards J, Bradshaw-Cordum H, Ali J, Andrews S, Isak A, Vanbrunt A, Nguyen C, Du F, Lamar B, Courtney L, Kalicki J, Ozersky P, Bielicki L, Scott K, Holmes A, Harkins R, Harris A, Strong CM, Hou S, Tomlinson C, Dauphin-Kohlberg S, Kozlowicz-Reilly A, Leonard S, Rohlfing T, Rock SM, Tin-Wollam AM, Abbott A, Minx P, Maupin R, Strowmatt C, Latreille P, Miller N, Johnson D, Murray J, Woessner JP, Wendl MC, Yang SP, Schultz BR, Wallis JW, Spieth J, Bieri TA, Nelson JO, Berkowicz N, Wohldmann PE, Cook LL, Hickenbotham MT, Eldred J, Williams D, Bedell JA, Mardis ER, Clifton SW, Chissoe SL, Marra MA, Raymond C, Haugen E, Gillett W, Zhou Y, James R, Phelps K, Iadanoto S, Bubb K, Simms E, Levy R, Clendenning J, Kaul R, Kent WJ, Furey TS, Baertsch RA, Brent MR, Keibler E, Flicek P, Bork P, Suyama M, Bailey JA, Portnoy ME, Torrents D, Chinwalla AT, Gish WR, Eddy SR, McPherson JD, Olson MV, Eichler EE, Green ED, Waterston RH, Wilson RK
    Nature 2003 Jul 10;424(6945):157-64
  • Open-Source Answer to Bibliography Problem
    Wendl MC, Dooling DJ
    Nature 2003 Aug 28;424(6952):995
  • Generalized Gap Model for Bacterial Artificial Chromosome Clone Fingerprint Mapping and Shotgun Sequencing
    Wendl MC, Waterston RH
    Genome Res 2002 Dec;12(12):1943-9
  • Initial Sequencing and Comparative Analysis of the Mouse Genome
    Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, Agarwal P, Agarwala R, Ainscough R, Alexandersson M, An P, Antonarakis SE, Attwood J, Baertsch R, Bailey J, Barlow K, Beck S, Berry E, Birren B, Bloom T, Bork P, Botcherby M, Bray N, Brent MR, Brown DG, Brown SD, Bult C, Burton J, Butler J, Campbell RD, Carninci P, Cawley S, Chiaromonte F, Chinwalla AT, Church DM, Clamp M, Clee C, Collins FS, Cook LL, Copley RR, Coulson A, Couronne O, Cuff J, Curwen V, Cutts T, Daly M, David R, Davies J, Delehaunty KD, Deri J, Dermitzakis ET, Dewey C, Dickens NJ, Diekhans M, Dodge S, Dubchak I, Dunn DM, Eddy SR, Elnitski L, Emes RD, Eswara P, Eyras E, Felsenfeld A, Fewell GA, Flicek P, Foley K, Frankel WN, Fulton LA, Fulton RS, Furey TS, Gage D, Gibbs RA, Glusman G, Gnerre S, Goldman N, Goodstadt L, Grafham D, Graves TA, Green ED, Gregory S, Guigo R, Guyer M, Hardison RC, Haussler D, Hayashizaki Y, Hillier LW, Hinrichs A, Hlavina W, Holzer T, Hsu F, Hua A, Hubbard T, Hunt A, Jackson I, Jaffe DB, Johnson LS, Jones M, Jones TA, Joy A, Kamal M, Karlsson EK, Karolchik D, Kasprzyk A, Kawai J, Keibler E, Kells C, Kent WJ, Kirby A, Kolbe DL, Korf I, Kucherlapati RS, Kulbokas EJ, Kulp D, Landers T, Leger JP, Leonard S, Letunic I, Levine R, Li J, Li M, Lloyd C, Lucas S, Ma B, Maglott DR, Mardis ER, Matthews L, Mauceli E, Mayer JH, McCarthy M, McCombie WR, McLaren S, McLay K, McPherson JD, Meldrim J, Meredith B, Mesirov JP, Miller W, Miner TL, Mongin E, Montgomery KT, Morgan M, Mott R, Mullikin JC, Muzny DM, Nash WE, Nelson JO, Nhan MN, Nicol R, Ning Z, Nusbaum C, O'Connor MJ, Okazaki Y, Oliver K, Overton-Larty E, Pachter L, Parra G, Pepin KH, Peterson J, Pevzner P, Plumb R, Pohl CS, Poliakov A, Ponce TC, Ponting CP, Potter S, Quail M, Reymond A, Roe BA, Roskin KM, Rubin EM, Rust AG, Santos R, Sapojnikov V, Schultz B, Schultz J, Schwartz MS, Schwartz S, Scott C, Seaman S, Searle S, Sharpe T, Sheridan A, Shownkeen R, Sims S, Singer JB, Slater G, Smit A, Smith DR, Spencer B, Stabenau A, Stange-Thomann N, Sugnet C, Suyama M, Tesler G, Thompson J, Torrents D, Trevaskis E, Tromp J, Ucla C, Ureta-Vidal A, Vinson JP, Von Niederhausern AC, Wade CM, Wall M, Weber RJ, Weiss RB, Wendl MC, West AP, Wetterstrand K, Wheeler R, Whelan S, Wierzbowski J, Willey D, Williams S, Wilson RK, Winter E, Worley KC, Wyman D, Yang S, Yang SP, Zdobnov EM, Zody MC, Lander ES
    Mouse Genome Sequencing Consortium

    Nature 2002 Dec 5;420(6915):520-62
  • Viscous Dissipation in Finite Thin-Gap Couette Devices
    Wendl MC, Agarwal RK
    Journal of Heat Transfer 2002;124(1):200-203
  • Mathematical Analysis of Coaxial Disk Cellular Shear Loading Devices
    Wendl MC
    Review of Scientific Instruments 2001;72(11):4212-4217
  • Theories and Applications for Sequencing Randomly Selected Clones
    Wendl MC, Marra MA, Hillier LW, Chinwalla AT, Wilson RK, Waterston RH
    Genome Res 2001 Feb;11(2):274-80
  • Automated Processing of Raw DNA Sequence Data
    Wendl MC, Korf I, Chinwalla AT, Hillier LW
    IEEE Eng Med Biol Mag 2001 Jul-Aug;20(4):41-8
  • Initial Sequencing and Analysis of the Human Genome
    Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, Baldwin J, Devon K, Dewar K, Doyle M, FitzHugh W, Funke R, Gage D, Harris K, Heaford A, Howland J, Kann L, Lehoczky J, LeVine R, McEwan P, McKernan K, Meldrim J, Mesirov JP, Miranda C, Morris W, Naylor J, Raymond C, Rosetti M, Santos R, Sheridan A, Sougnez C, Stange-Thomann Y, Stojanovic N, Subramanian A, Wyman D, Rogers J, Sulston J, Ainscough R, Beck S, Bentley D, Burton J, Clee C, Carter N, Coulson A, Deadman R, Deloukas P, Dunham A, Dunham I, Durbin R, French L, Grafham D, Gregory S, Hubbard T, Humphray S, Hunt A, Jones M, Lloyd C, McMurray A, Matthews L, Mercer S, Milne S, Mullikin JC, Mungall A, Plumb R, Ross M, Shownkeen R, Sims S, Waterston RH, Wilson RK, Hillier LW, McPherson JD, Marra MA, Mardis ER, Fulton LA, Chinwalla AT, Pepin KH, Gish WR, Chissoe SL, Wendl MC, Delehaunty KD, Miner TL, Delehaunty A, Kramer JB, Cook LL, Fulton RS, Johnson DL, Minx PJ, Clifton SW, Hawkins T, Branscomb E, Predki P, Richardson P, Wenning S, Slezak T, Doggett N, Cheng JF, Olsen A, Lucas S, Elkin C, Uberbacher E, Frazier M, Gibbs RA, Muzny DM, Scherer SE, Bouck JB, Sodergren EJ, Worley KC, Rives CM, Gorrell JH, Metzker ML, Naylor SL, Kucherlapati RS, Nelson DL, Weinstock GM, Sakaki Y, Fujiyama A, Hattori M, Yada T, Toyoda A, Itoh T, Kawagoe C, Watanabe H, Totoki Y, Taylor T, Weissenbach J, Heilig R, Saurin W, Artiguenave F, Brottier P, Bruls T, Pelletier E, Robert C, Wincker P, Smith DR, Doucette-Stamm L, Rubenfield M, Weinstock K, Lee HM, Dubois J, Rosenthal A, Platzer M, Nyakatura G, Taudien S, Rump A, Yang H, Yu J, Wang J, Huang G, Gu J, Hood L, Rowen L, Madan A, Qin S, Davis RW, Federspiel NA, Abola AP, Proctor MJ, Myers RM, Schmutz J, Dickson M, Grimwood J, Cox DR, Olson MV, Kaul R, Raymond C, Shimizu N, Kawasaki K, Minoshima S, Evans GA, Athanasiou M, Schultz R, Roe BA, Chen F, Pan H, Ramser J, Lehrach H, Reinhardt R, McCombie WR, de la Bastide M, Dedhia N, Blocker H, Hornischer K, Nordsiek G, Agarwala R, Aravind L, Bailey JA, Bateman A, Batzoglou S, Birney E, Bork P, Brown DG, Burge CB, Cerutti L, Chen HC, Church D, Clamp M, Copley RR, Doerks T, Eddy SR, Eichler EE, Furey TS, Galagan J, Gilbert JG, Harmon C, Hayashizaki Y, Haussler D, Hermjakob H, Hokamp K, Jang W, Johnson LS, Jones TA, Kasif S, Kaspryzk A, Kennedy S, Kent WJ, Kitts P, Koonin EV, Korf I, Kulp D, Lancet D, Lowe TM, McLysaght A, Mikkelsen T, Moran JV, Mulder N, Pollara VJ, Ponting CP, Schuler G, Schultz J, Slater G, Smit AF, Stupka E, Szustakowki J, Thierry-Mieg D, Thierry-Mieg J, Wagner L, Wallis J, Wheeler R, Williams A, Wolf YI, Wolfe KH, Yang SP, Yeh RF, Collins F, Guyer MS, Peterson J, Felsenfeld A, Wetterstrand KA, Patrinos A, Morgan MJ, de Jong P, Catanese JJ, Osoegawa K, Shizuya H, Choi S, Chen YJ, Szustakowki J
    International Human Genome Sequencing Consortium

    Nature 2001 Feb 15;409(6822):860-921
  • Couette Flow Profiles for Two Non-Classical Taylor-Couette Cells
    Wendl MC, Agarwal RK
    Journal of Fluids Engineering 2000;122(2):435-438
  • General Solution for the Couette Flow Profile
    Wendl MC
    Physical Review E 1999;60(5):6192-6194
  • A Method for Obtaining Benchmark Navier-Stokes Solutions
    Wendl MC
    International Journal for Numerical Methods in Fluids 1999;31(3):657-660
  • Genome Sequence of the Nematode C. Elegans: A Platform for Investigating Biology
    C. elegans Sequencing Consortium (Collaborators include: Wendl MC)
    Science 1998 Dec 11;282(5396):2012-8
  • Automated Sequence Preprocessing in a Large-Scale Sequencing Environment
    Wendl MC, Dear S, Hodgson D, Hillier L
    Genome Res 1998 Sep;8(9):975-84
  • Base-Calling of Automated Sequencer Traces Using Phred. I. Accuracy Assessment
    Ewing B, Hillier L, Wendl MC, Green P
    Genome Res 1998 Mar;8(3):175-85
  • Computer Testing Not Yet Mature
    Wendl MC
    American Physical Therapy Association Bulletin 1997;12(16):16

Book Chapters

  • Genome Assembly
    Wendl MC et al.
    In: Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics (PFR Little, ed.), Wiley, Vol. 3, pp 1047-1058, 2005
  • The Mouse Genome Sequencing Project: An Overview
    Wendl MC et al.
    In: The Mouse in Animal Genetics and Breeding Research (EJ Eisen, ed.), World Scientific, pp 341-352, 2005
  • Software for Genomic Sequencing
    Wendl MC et al.
    In: Genome Mapping and Sequencing (I Dunham, ed.), Horizon Scientific Press, pp 357-395, 2003
  • Mass Conservation and the Accuracy of Non-Staggered Grid Incompressible Flow Schemes
    Wendl MC, Agarwal RK
    In: Numerical Simulations of Incompressible Flows (MM Hafez, ed.), World Scientific, pp 86-97, 2003
  • Mathematics and Numeracy
    Wendl MC
    In: Encyclopedia of the United States in the Nineteenth Century (P Finkelman, ed.), Charles Scribner’s Sons, Vol. 2, pp 273-274, 2001