Faculty
Oncology Division
Alphabetical list (active faculty):   
Matthew A. Wyczalkowski

Matthew A. Wyczalkowski, PhD

Instructor

Department of Medicine

Oncology Division

Computational Biology

Research Interests

  • Cancer genomics
  • Bioinformatics pipeline development
  • Data visualization and scientific illustration
  • Computational biology

Contact

  • 314-273-1207 (office)
  • 314-747-9320 (fax)
  • Division of Oncology
    Mail Stop 8076-0041-03
    Washington University
    660 South Euclid Avenue
    St. Louis, MO 63110
  • Room 3203Q, Couch Biomedical Research Building (office)

Original Articles

  • Proteogenomic Characterization of Pancreatic Ductal Adenocarcinoma
    Cao L, Huang C, Cui Zhou D, Hu Y, Lih TM, Savage SR, Krug K, Clark DJ, Schnaubelt M, Chen L, da Veiga Leprevost F, Eguez RV, Yang W, Pan J, Wen B, Dou Y, Jiang W, Liao Y, Shi Z, Terekhanova NV, Cao S, Lu RJ, Li Y, Liu R, Zhu H, Ronning P, Wu Y, Wyczalkowski MA, Easwaran H, Danilova L, Mer AS, Yoo S, Wang JM, Liu W, Haibe-Kains B, Thiagarajan M, Jewell SD, Hostetter G, Newton CJ, Li QK, Roehrl MH, Fenyo D, Wang P, Nesvizhskii AI, Mani DR, Omenn GS, Boja ES, Mesri M, Robles AI, Rodriguez H, Bathe OF, Chan DW, Hruban RH, Ding L, Zhang B, Zhang H
    Clinical Proteomic Tumor Analysis Consortium

    Cell 2021 Sep 16;184(19):5031-5052
  • Comprehensive Characterization of 536 Patient-Derived Xenograft Models Prioritizes Candidates For Targeted Treatment
    Sun H, Cao S, Mashl RJ, Mo CK, Zaccaria S, Wendl MC, Davies SR, Bailey MH, Primeau TM, Hoog J, Mudd JL, Dean DA 2nd, Patidar R, Chen L, Wyczalkowski MA, Jayasinghe RG, Rodrigues FM, Terekhanova NV, Li Y, Lim KH, Wang-Gillam A, Van Tine BA, Ma CX, Aft R, Fuh KC, Schwarz JK, Zevallos JP, Puram SV, DiPersio JF, Davis-Dusenbery B, Ellis MJ, Lewis MT, Davies MA, Herlyn M, Fang B, Roth JA, Welm AL, Welm BE, Meric-Bernstam F, Chen F, Fields RC, Li S, Govindan R, Doroshow JH, Moscow JA, Evrard YA, Chuang JH, Raphael BJ, Ding L
    NCI PDXNET Consortium

    Nat Commun 2021 Aug 24;12(1):5086
  • A Proteogenomic Portrait of Lung Squamous Cell Carcinoma
    Satpathy S, Krug K, Jean Beltran PM, Savage SR, Petralia F, Kumar-Sinha C, Dou Y, Reva B, Kane MH, Avanessian SC, Vasaikar SV, Krek A, Lei JT, Jaehnig EJ, Omelchenko T, Geffen Y, Bergstrom EJ, Stathias V, Christianson KE, Heiman DI, Cieslik MP, Cao S, Song X, Ji J, Liu W, Li K, Wen B, Li Y, Gumus ZH, Selvan ME, Soundararajan R, Visal TH, Raso MG, Parra ER, Babur O, Vats P, Anand S, Schraink T, Cornwell M, Rodrigues FM, Zhu H, Mo CK, Zhang Y, da Veiga Leprevost F, Huang C, Chinnaiyan AM, Wyczalkowski MA, Omenn GS, Newton CJ, Schurer S, Ruggles KV, Fenyo D, Jewell SD, Thiagarajan M, Mesri M, Rodriguez H, Mani SA, Udeshi ND, Getz G, Suh J, Li QK, Hostetter G, Paik PK, Dhanasekaran SM, Govindan R, Ding L, Robles AI, Clauser KR, Nesvizhskii AI, Wang P, Carr SA, Zhang B, Mani DR, Gillette MA
    Clinical Proteomic Tumor Analysis Consortium

    Cell 2021 Aug 5;184(16):4348-4371
  • Co-Evolution of Tumor and Immune Cells During Progression of Multiple Myeloma
    Liu R, Gao Q, Foltz SM, Fowles JS, Yao L, Wang JT, Cao S, Sun H, Wendl MC, Sethuraman S, Weerasinghe A, Rettig MP, Storrs EP, Yoon CJ, Wyczalkowski MA, McMichael JF, Kohnen DR, King J, Goldsmith SR, O'Neal J, Fulton RS, Fronick CC, Ley TJ, Jayasinghe RG, Fiala MA, Oh ST, DiPersio JF, Vij R, Ding L
    Nat Commun 2021 May 7;12(1):2559
  • Spatially Interacting Phosphorylation Sites and Mutations in Cancer
    Huang KL, Scott AD, Zhou DC, Wang LB, Weerasinghe A, Elmas A, Liu R, Wu Y, Wendl MC, Wyczalkowski MA, Baral J, Sengupta S, Lai CW, Ruggles K, Payne SH, Raphael B, Fenyo D, Chen K, Mills G, Ding L
    Nat Commun 2021 Apr 19;12(1):2313
  • Spatial Drivers and Pre-Cancer Populations Collaborate With the Microenvironment in Untreated and Chemo-Resistant Pancreatic Cancer
    Cui Zhou D, Jayasinghe RG, Herndon JM, Storrs E, Mo CK, Wu Y, Fulton RS, Wyczalkowski MA, Fronick CC, Fulton LA, Thammavong L, Sato K, Zhu H, Sun H, Wang LB, Yize Li, Zuo C, McMichael JF, Davies SR, Appelbaum EL, Robbins KJ, Chasnoff SE, Yang X, Liu R, Reeb A, Wendl MC, Oh C, Serasanambati M, Lal P, Varghese R, Mashl RJ, Ponce J, Terekhanova NV, Naser Al Deen N, Yao L, Wang F, Chen L, Schnaubelt M, Puram SV, Kim AH, Song SK, Shoghi KI, Ju T, Hawkins WG, Chen K, Chatterjee D, Zhang H, Chheda MG, Achilefu S, DeNardo DG, Oh ST, Chen F, Gillanders WE, Fields RC, Ding L
    https://www.biorxiv.org/content/10.1101/2021.01.13.426413v1.full
  • Proteogenomic Insights Into the Biology and Treatment of HPV-Negative Head and Neck Squamous Cell Carcinoma
    Huang C, Chen L, Savage SR, Eguez RV, Dou Y, Li Y, da Veiga Leprevost F, Jaehnig EJ, Lei JT, Wen B, Schnaubelt M, Krug K, Song X, Cieslik M, Chang HY, Wyczalkowski MA, Li K, Colaprico A, Li QK, Clark DJ, Hu Y, Cao L, Pan J, Wang Y, Cho KC, Shi Z, Liao Y, Jiang W, Anurag M, Ji J, Yoo S, Zhou DC, Liang WW, Wendl M, Vats P, Carr SA, Mani DR, Zhang Z, Qian J, Chen XS, Pico AR, Wang P, Chinnaiyan AM, Ketchum KA, Kinsinger CR, Robles AI, An E, Hiltke T, Mesri M, Thiagarajan M, Weaver AM, Sikora AG, Lubinski J, Wierzbicka M, Wiznerowicz M, Satpathy S, Gillette MA, Miles G, Ellis MJ, Omenn GS, Rodriguez H, Boja ES, Dhanasekaran SM, Ding L, Nesvizhskii AI, El-Naggar AK, Chan DW, Zhang H, Zhang B
    Clinical Proteomic Tumor Analysis Consortium

    Cancer Cell 2021 Mar 8;39(3):361-379
  • Proteogenomic and Metabolomic Characterization of Human Glioblastoma
    Wang LB, Karpova A, Gritsenko MA, Kyle JE, Cao S, Li Y, Rykunov D, Colaprico A, Rothstein JH, Hong R, Stathias V, Cornwell M, Petralia F, Wu Y, Reva B, Krug K, Pugliese P, Kawaler E, Olsen LK, Liang WW, Song X, Dou Y, Wendl MC, Caravan W, Liu W, Cui Zhou D, Ji J, Tsai CF, Petyuk VA, Moon J, Ma W, Chu RK, Weitz KK, Moore RJ, Monroe ME, Zhao R, Yang X, Yoo S, Krek A, Demopoulos A, Zhu H, Wyczalkowski MA, McMichael JF, Henderson BL, Lindgren CM, Boekweg H, Lu S, Baral J, Yao L, Stratton KG, Bramer LM, Zink E, Couvillion SP, Bloodsworth KJ, Satpathy S, Sieh W, Boca SM, Schurer S, Chen F, Wiznerowicz M, Ketchum KA, Boja ES, Kinsinger CR, Robles AI, Hiltke T, Thiagarajan M, Nesvizhskii AI, Zhang B, Mani DR, Ceccarelli M, Chen XS, Cottingham SL, Li QK, Kim AH, Fenyo D, Ruggles KV, Rodriguez H, Mesri M, Payne SH, Resnick AC, Wang P, Smith RD, Iavarone A, Chheda MG, Barnholtz-Sloan JS, Rodland KD, Liu T, Ding L
    Clinical Proteomic Tumor Analysis Consortium

    Cancer Cell 2021 Apr 12;39(4):509-528
  • Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy
    Krug K, Jaehnig EJ, Satpathy S, Blumenberg L, Karpova A, Anurag M, Miles G, Mertins P, Geffen Y, Tang LC, Heiman DI, Cao S, Maruvka YE, Lei JT, Huang C, Kothadia RB, Colaprico A, Birger C, Wang J, Dou Y, Wen B, Shi Z, Liao Y, Wiznerowicz M, Wyczalkowski MA, Chen XS, Kennedy JJ, Paulovich AG, Thiagarajan M, Kinsinger CR, Hiltke T, Boja ES, Mesri M, Robles AI, Rodriguez H, Westbrook TF, Ding L, Getz G, Clauser KR, Fenyo D, Ruggles KV, Zhang B, Mani DR, Carr SA, Ellis MJ, Gillette MA
    Clinical Proteomic Tumor Analysis Consortium

    Cell 2020 Nov 25;183(5):1436-1456
  • Discovery of Driver Non-Coding Splice-Site-Creating Mutations in Cancer
    Cao S, Zhou DC, Oh C, Jayasinghe RG, Zhao Y, Yoon CJ, Wyczalkowski MA, Bailey MH, Tsou T, Gao Q, Malone A, Reynolds S, Shmulevich I, Wendl MC, Chen F, Ding L
    Nat Commun 2020 Nov 4;11(1):5573
  • Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma
    Gillette MA, Satpathy S, Cao S, Dhanasekaran SM, Vasaikar SV, Krug K, Petralia F, Li Y, Liang WW, Reva B, Krek A, Ji J, Song X, Liu W, Hong R, Yao L, Blumenberg L, Savage SR, Wendl MC, Wen B, Li K, Tang LC, MacMullan MA, Avanessian SC, Kane MH, Newton CJ, Cornwell M, Kothadia RB, Ma W, Yoo S, Mannan R, Vats P, Kumar-Sinha C, Kawaler EA, Omelchenko T, Colaprico A, Geffen Y, Maruvka YE, da Veiga Leprevost F, Wiznerowicz M, Gumus ZH, Veluswamy RR, Hostetter G, Heiman DI, Wyczalkowski MA, Hiltke T, Mesri M, Kinsinger CR, Boja ES, Omenn GS, Chinnaiyan AM, Rodriguez H, Li QK, Jewell SD, Thiagarajan M, Getz G, Zhang B, Fenyo D, Ruggles KV, Cieslik MP, Robles AI, Clauser KR, Govindan R, Wang P, Nesvizhskii AI, Ding L, Mani DR, Carr SA
    Clinical Proteomic Tumor Analysis Consortium

    Cell 2020 Jul 9;182(1):200-225
  • Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability
    McDermott JE, Arshad OA, Petyuk VA, Fu Y, Gritsenko MA, Clauss TR, Moore RJ, Schepmoes AA, Zhao R, Monroe ME, Schnaubelt M, Tsai CF, Payne SH, Huang C, Wang LB, Foltz S, Wyczalkowski M, Wu Y, Song E, Brewer MA, Thiagarajan M, Kinsinger CR, Robles AI, Boja ES, Rodriguez H, Chan DW, Zhang B, Zhang Z, Ding L, Smith RD, Liu T, Rodland KD
    Clinical Tumor Analysis Consortium

    Cell Rep Med 2020 Apr 21;1(1)
  • Proteogenomic Characterization of Endometrial Carcinoma
    Dou Y, Kawaler EA, Cui Zhou D, Gritsenko MA, Huang C, Blumenberg L, Karpova A, Petyuk VA, Savage SR, Satpathy S, Liu W, Wu Y, Tsai CF, Wen B, Li Z, Cao S, Moon J, Shi Z, Cornwell M, Wyczalkowski MA, Chu RK, Vasaikar S, Zhou H, Gao Q, Moore RJ, Li K, Sethuraman S, Monroe ME, Zhao R, Heiman D, Krug K, Clauser K, Kothadia R, Maruvka Y, Pico AR, Oliphant AE, Hoskins EL, Pugh SL, Beecroft SJI, Adams DW, Jarman JC, Kong A, Chang HY, Reva B, Liao Y, Rykunov D, Colaprico A, Chen XS, Czekanski A, Jedryka M, Matkowski R, Wiznerowicz M, Hiltke T, Boja E, Kinsinger CR, Mesri M, Robles AI, Rodriguez H, Mutch D, Fuh K, Ellis MJ, DeLair D, Thiagarajan M, Mani DR, Getz G, Noble M, Nesvizhskii AI, Wang P, Anderson ML, Levine DA, Smith RD, Payne SH, Ruggles KV, Rodland KD, Ding L, Zhang B, Liu T, Fenyo D
    Clinical Proteomic Tumor Analysis Consortium

    Cell 2020 Feb 20;180(4):729-748
  • Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma
    Clark DJ, Dhanasekaran SM, Petralia F, Pan J, Song X, Hu Y, da Veiga Leprevost F, Reva B, Lih TM, Chang HY, Ma W, Huang C, Ricketts CJ, Chen L, Krek A, Li Y, Rykunov D, Li QK, Chen LS, Ozbek U, Vasaikar S, Wu Y, Yoo S, Chowdhury S, Wyczalkowski MA, Ji J, Schnaubelt M, Kong A, Sethuraman S, Avtonomov DM, Ao M, Colaprico A, Cao S, Cho KC, Kalayci S, Ma S, Liu W, Ruggles K, Calinawan A, Gumus ZH, Geizler D, Kawaler E, Teo GC, Wen B, Zhang Y, Keegan S, Li K, Chen F, Edwards N, Pierorazio PM, Chen XS, Pavlovich CP, Hakimi AA, Brominski G, Hsieh JJ, Antczak A, Omelchenko T, Lubinski J, Wiznerowicz M, Linehan WM, Kinsinger CR, Thiagarajan M, Boja ES, Mesri M, Hiltke T, Robles AI, Rodriguez H, Qian J, Fenyo D, Zhang B, Ding L, Schadt E, Chinnaiyan AM, Zhang Z, Omenn GS, Cieslik M, Chan DW, Nesvizhskii AI, Wang P, Zhang H
    Clinical Proteomic Tumor Analysis Consortium

    Cell 2019 Oct 31;179(4):964-983e31
  • Before and After: Comparison of Legacy and Harmonized TCGA Genomic Data Commons' Data
    Gao GF, Parker JS, Reynolds SM, Silva TC, Wang LB, Zhou W, Akbani R, Bailey M, Balu S, Berman BP, Brooks D, Chen H, Cherniack AD, Demchok JA, Ding L, Felau I, Gaheen S, Gerhard DS, Heiman DI, Hernandez KM, Hoadley KA, Jayasinghe R, Kemal A, Knijnenburg TA, Laird PW, Mensah MKA, Mungall AJ, Robertson AG, Shen H, Tarnuzzer R, Wang Z, Wyczalkowski M, Yang L, Zenklusen JC, Zhang Z, Liang H, Noble MS
    Genomic Data Analysis Network

    Cell Syst 2019 Jul 24;9(1):24-34e10
  • Dynamic Host Immune Response in Virus-Associated Cancers
    Cao S, Wylie KM, Wyczalkowski MA, Karpova A, Ley J, Sun S, Mashl RJ, Liang WW, Wang X, Johnson K, DiPersio JF, Gay H, Ratner L, Chen F, Adkins DR, Ding L
    Commun Biol 2019 Mar 22;2(1):109
  • CharGer: Clinical Characterization of Germline Variants
    Scott AD, Huang KL, Weerasinghe A, Mashl RJ, Gao Q, Martins Rodrigues F, Wyczalkowski MA, Ding L
    Bioinformatics 2019 Mar 1;35(5):865-867
  • Database of Evidence for Precision Oncology Portal
    Sun SQ, Mashl RJ, Sengupta S, Scott AD, Wang W, Batra P, Wang LB, Wyczalkowski MA, Ding L
    Bioinformatics 2018 Dec 15;34(24):4315-4317
  • Integrative Omics Analyses Broaden Treatment Targets in Human Cancer
    Sengupta S, Sun SQ, Huang KL, Oh C, Bailey MH, Varghese R, Wyczalkowski MA, Ning J, Tripathi P, McMichael JF, Johnson KJ, Kandoth C, Welch J, Ma C, Wendl MC, Payne SH, Fenyo D, Townsend RR, Dipersio JF, Chen F, Ding L
    Genome Med 2018 Jul 27;10(1):60
  • Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics
    Ding L, Bailey MH, Porta-Pardo E, Thorsson V, Colaprico A, Bertrand D, Gibbs DL, Weerasinghe A, Huang KL, Tokheim C, Cortes-Ciriano I, Jayasinghe R, Chen F, Yu L, Sun S, Olsen C, Kim J, Taylor AM, Cherniack AD, Akbani R, Suphavilai C, Nagarajan N, Stuart JM, Mills GB, Wyczalkowski MA, Vincent BG, Hutter CM, Zenklusen JC, Hoadley KA, Wendl MC, Shmulevich L, Lazar AJ, Wheeler DA, Getz G
    Cancer Genome Atlas Research Network

    Cell 2018 Apr 5;173(2):305-320e10
  • Pathogenic Germline Variants in 10,389 Adult Cancers
    Huang KL, Mashl RJ, Wu Y, Ritter DI, Wang J, Oh C, Paczkowska M, Reynolds S, Wyczalkowski MA, Oak N, Scott AD, Krassowski M, Cherniack AD, Houlahan KE, Jayasinghe R, Wang LB, Zhou DC, Liu D, Cao S, Kim YW, Koire A, McMichael JF, Hucthagowder V, Kim TB, Hahn A, Wang C, McLellan MD, Al-Mulla F, Johnson KJ, Lichtarge O, Boutros PC, Raphael B, Lazar AJ, Zhang W, Wendl MC, Govindan R, Jain S, Wheeler D, Kulkarni S, Dipersio JF, Reimand J, Meric-Bernstam F, Chen K, Shmulevich I, Plon SE, Chen F, Ding L
    Cancer Genome Atlas Research Network

    Cell 2018 Apr 5;173(2):355-370e14
  • Driver Fusions and Their Implications in the Development and Treatment of Human Cancers
    Gao Q, Liang WW, Foltz SM, Mutharasu G, Jayasinghe RG, Cao S, Liao WW, Reynolds SM, Wyczalkowski MA, Yao L, Yu L, Sun SQ, Chen K, Lazar AJ, Fields RC, Wendl MC, Van Tine BA, Vij R, Chen F, Nykter M, Shmulevich I, Ding L
    Fusion Analysis Working Group

    Cell Rep 2018 Apr 3;23(1):227-238e3
  • Systematic Analysis of Splice-Site-Creating Mutations in Cancer
    Jayasinghe RG, Cao S, Gao Q, Wendl MC, Vo NS, Reynolds SM, Zhao Y, Climente-Gonzalez H, Chai S, Wang F, Varghese R, Huang M, Liang WW, Wyczalkowski MA, Sengupta S, Li Z, Payne SH, Fenyo D, Miner JH, Walter MJ, Vincent B, Eyras E, Chen K, Shmulevich I, Chen F, Ding L
    Cancer Genome Atlas Research Network

    Cell Rep 2018 Apr 3;23(1):270-281e3
  • Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas
    Cancer Genome Atlas Research Network (Corresponding author: Ding L; Contributors include: Bailey MH, Gao Q, Wong W, Wyczalkowski MA, Yellapantula V)
    Cell 2017 Nov 2;171(4):950-965e28
  • BreakPoint Surveyor: A Pipeline for Structural Variant Visualization
    Wyczalkowski MA, Wylie KM, Cao S, McLellan MD, Flynn J, Huang M, Ye K, Fan X, Chen K, Wendl MC, Ding L
    Bioinformatics 2017 Oct 1;33(19):3121-3122
  • GenomeVIP: A Cloud Platform for Genomic Variant Discovery and Interpretation
    Mashl RJ, Scott AD, Huang KL, Wyczalkowski MA, Yoon CJ, Niu B, DeNardo E, Yellapantula VD, Handsaker RE, Chen K, Koboldt DC, Ye K, Fenyo D, Raphael BJ, Wendl MC, Ding L
    Genome Res 2017 Aug;27(8):1450-1459
  • Proteogenomic Integration Reveals Therapeutic Targets in Breast Cancer Xenografts
    Huang KL, Li S, Mertins P, Cao S, Gunawardena HP, Ruggles KV, Mani DR, Clauser KR, Tanioka M, Usary J, Kavuri SM, Xie L, Yoon C, Qiao JW, Wrobel J, Wyczalkowski MA, Erdmann-Gilmore P, Snider JE, Hoog J, Singh P, Niu B, Guo Z, Sun SQ, Sanati S, Kawaler E, Wang X, Scott A, Ye K, McLellan MD, Wendl MC, Malovannaya A, Held JM, Gillette MA, Fenyo D, Kinsinger CR, Mesri M, Rodriguez H, Davies SR, Perou CM, Ma C, Reid Townsend R, Chen X, Carr SA, Ellis MJ, Ding L
    Nat Commun 2017 Mar 28;8:14864
  • Integrated Genomic and Molecular Characterization of Cervical Cancer
    Cancer Genome Atlas Research Network (Contributors include: Ding L, Bailey M, Wyczalkowski M)
    Nature 2017 Mar 16;543(7645):378-384
  • Protein-Structure-Guided Discovery of Functional Mutations Across 19 Cancer Types
    Niu B, Scott AD, Sengupta S, Bailey MH, Batra P, Ning J, Wyczalkowski MA, Liang WW, Zhang Q, McLellan MD, Sun SQ, Tripathi P, Lou C, Ye K, Mashl RJ, Wallis J, Wendl MC, Chen F, Ding L
    Nat Genet 2016 Aug;48(8):827-37
  • Divergent Viral Presentation Among Human Tumors and Adjacent Normal Tissues
    Cao S, Wendl MC, Wyczalkowski MA, Wylie K, Ye K, Jayasinghe R, Xie M, Wu S, Niu B, Grubb R 3rd, Johnson KJ, Gay H, Chen K, Rader JS, Dipersio JF, Chen F, Ding L
    Sci Rep 2016 Jun 24;6:28294
  • Patterns and Functional Implications of Rare Germline Variants Across 12 Cancer Types
    Lu C, Xie M, Wendl MC, Wang J, McLellan MD, Leiserson MD, Huang KL, Wyczalkowski MA, Jayasinghe R, Banerjee T, Ning J, Tripathi P, Zhang Q, Niu B, Ye K, Schmidt HK, Fulton RS, McMichael JF, Batra P, Kandoth C, Bharadwaj M, Koboldt DC, Miller CA, Kanchi KL, Eldred JM, Larson DE, Welch JS, You M, Ozenberger BA, Govindan R, Walter MJ, Ellis MJ, Mardis ER, Graubert TA, Dipersio JF, Ley TJ, Wilson RK, Goodfellow PJ, Raphael BJ, Chen F, Johnson KJ, Parvin JD, Ding L
    Nat Commun 2015 Dec 22;6:10086
  • The Genomic Landscape of Childhood and Adolescent Melanoma
    Lu C, Zhang J, Nagahawatte P, Easton J, Lee S, Liu Z, Ding L, Wyczalkowski MA, Valentine M, Navid F, Mulder H, Tatevossian RG, Dalton J, Davenport J, Yin Z, Edmonson M, Rusch M, Wu G, Li Y, Parker M, Hedlund E, Shurtleff S, Raimondi S, Bhavin V, Donald Y, Mardis ER, Wilson RK, Evans WE, Ellison DW, Pounds S, Dyer M, Downing JR, Pappo A, Bahrami A
    J Invest Dermatol 2015 Mar;135(3):816-823
  • Simple and Accurate Methods for Quantifying Deformation, Disruption, and Development in Biological Tissues
    Boyle JJ, Kume M, Wyczalkowski MA, Taber LA, Pless RB, Xia Y, Genin GM, Thomopoulos S
    J R Soc Interface 2014 Nov 6;11(100):20140685
  • Integrated Analysis of Germline and Somatic Variants in Ovarian Cancer
    Kanchi KL, Johnson KJ, Lu C, McLellan MD, Leiserson MD, Wendl MC, Zhang Q, Koboldt DC, Xie M, Kandoth C, McMichael JF, Wyczalkowski MA, Larson DE, Schmidt HK, Miller CA, Fulton RS, Spellman PT, Mardis ER, Druley TE, Graubert TA, Goodfellow PJ, Raphael BJ, Wilson RK, Ding L
    Nat Commun 2014;5:3156
  • Mutational Landscape and Significance Across 12 Major Cancer Types
    Kandoth C, McLellan MD, Vandin F, Ye K, Niu B, Lu C, Xie M, Zhang Q, McMichael JF, Wyczalkowski MA, Leiserson MDM, Miller CA, Welch JS, Walter MJ, Wendl MC, Ley TJ, Wilson RK, Raphael BJ, Ding L
    Nature 2013 Oct 17;502(7471):333-339
  • Computational and Experimental Study of the Mechanics of Embryonic Wound Healing
    Wyczalkowski MA, Varner VD, Taber LA
    J Mech Behav Biomed Mater 2013 Dec;28:125-46
  • Computational Models for Mechanics of Morphogenesis
    Wyczalkowski MA, Chen Z, Filas BA, Varner VD, Taber LA
    Birth Defects Res C Embryo Today 2012 Jun;96(2):132-52
  • New Estimators for Calculating Solvation Entropy and Enthalpy and Comparative Assessments of Their Accuracy and Precision
    Wyczalkowski MA, Vitalis A, Pappu RV
    J Phys Chem B 2010 Jun 24;114(24):8166-80
  • Niche Construction Through Cooperation: A Nonlinear Dynamics Contribution to Modeling Facets of the Evolutionary History in the Genus Homo
    Fuentes A, Wyczalkowski MA, MacKinnon KC
    Current Anthropology 2010;51(3):435-44
  • Satisfying the Fluctuation Theorem in Free-Energy Calculations With Hamiltonian Replica Exchange
    Wyczalkowski MA, Pappu RV
    Phys Rev E Stat Nonlin Soft Matter Phys 2008 Feb;77(2 Pt 2):026104
  • Characterizing the Conformational Ensemble of Monomeric Polyglutamine
    Wang X, Vitalis A, Wyczalkowski MA, Pappu RV
    Proteins 2006 May 1;63(2):297-311
  • Optimization of Acoustic Scattering From Dual-Frequency Driven Microbubbles at the Difference Frequency
    Wyczalkowski M, Szeri AJ
    J Acoust Soc Am 2003 Jun;113(6):3073-9
  • Adequacy of the Linearized Local Electric Field Determination in a Cubically Nonlinear Composite
    Wyczalkowski MA
    Optik 1997;105(1)41-4